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{bio,medical} informatics

Tuesday, August 08, 2000

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CCP11: Bioinformatics News Service BioJava 1.0
"BioJava 1.0. BioJava is an open source project which provides a Java framework for bioinformatics. Release 1.0 is the first stable release. You can read more about it at and download the code from" Design Overview
"BioJava is a general bioinformatics toolkit. It provides a framework for building everything from simple scripts to comples applications. BioJava is designed to be used as a library, so to make it usable we must:
-Design by Interface but provide working implementations so that you can always extend or replace behaviour and implementations.
-Provide extensive API documentation as well as a clear overview of how it all fits together.
-Give simple examples that show how to use the APIs.
The code-base is open source, and we encourage you to modify it or fix bugs, as allowed by the LGPL. Of course, if you wish to change anything major, then you will probably want to discuss it on the mailing list first."

[ rhetoric ]

Bioinformatics will be at the core of biology in the 21st century. In fields ranging from structural biology to genomics to biomedical imaging, ready access to data and analytical tools are fundamentally changing the way investigators in the life sciences conduct research and approach problems. Complex, computationally intensive biological problems are now being addressed and promise to significantly advance our understanding of biology and medicine. No biological discipline will be unaffected by these technological breakthroughs.


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